STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2247Hypothetical protein. (252 aa)    
Predicted Functional Partners:
Csac_2245
Hypothetical protein.
 
    0.970
Csac_2246
PFAM: ABC transporter related; SMART: AAA ATPase.
 
   0.947
Csac_2244
Hypothetical protein.
  
    0.833
Csac_2242
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.804
Csac_2243
Hypothetical protein.
       0.727
Csac_2162
PFAM: ABC transporter related; SMART: AAA ATPase.
 
   0.634
Csac_2415
Hypothetical protein.
  
 
 0.587
Csac_0515
PFAM: ABC transporter related; SMART: AAA ATPase.
 
   0.580
Csac_1477
PFAM: ABC transporter related; SMART: AAA ATPase.
 
   0.490
Csac_2241
Hypothetical protein.
       0.482
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.