STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2405Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10. (312 aa)    
Predicted Functional Partners:
Csac_2411
PFAM: Carbohydrate-binding, CenC domain protein domain protein; Carbohydrate binding family 6; glycoside hydrolase, family 43; SMART: cellulose binding, type IV.
   
 0.954
Csac_2404
PFAM: glycoside hydrolase, family 39.
 
  
 0.850
Csac_2406
Hypothetical protein.
      0.849
Csac_1155
Esterase/lipase-like protein.
 
     0.833
Csac_2689
Alpha-glucuronidase; PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.786
Csac_0359
PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.765
Csac_1085
PFAM: type 3a, cellulose-binding domain protein; glycosyl hydrolase, BNR repeat-containing protein.
  
   
 0.754
Csac_0663
Mannan endo-1,4-beta-mannosidase; PFAM: glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.747
Csac_2409
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase, family 39.
 
  
 0.738
Csac_0206
PFAM: protein of unknown function DUF303, acetylesterase putative; glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
  
   
 0.720
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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