STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2425Putative transcriptional regulator, CopG family. (81 aa)    
Predicted Functional Partners:
Csac_2424
PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated.
 
   
 0.925
Csac_1048
PFAM: periplasmic binding protein.
  
 
 0.918
Csac_0174
PFAM: transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.873
Csac_1049
PFAM: transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.873
Csac_1123
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein.
 
   
 0.846
Csac_0491
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.781
Csac_0536
PFAM: iron permease FTR1.
   
  
 0.472
Csac_1864
TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein.
 
     0.468
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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