STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2503ABC-type Na+ efflux pump permease component-like protein. (403 aa)    
Predicted Functional Partners:
Csac_2502
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.997
Csac_2189
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.656
Csac_2501
Hypothetical protein.
       0.563
Csac_2190
PFAM: secretion protein HlyD family protein.
 
     0.467
Csac_2500
Hypothetical protein.
       0.447
Csac_2498
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.430
Csac_2497
PFAM: regulatory protein GntR, HTH.
       0.424
Csac_2246
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.405
Csac_2499
Hypothetical protein.
       0.401
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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