STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2629Hypothetical protein. (183 aa)    
Predicted Functional Partners:
Csac_2628
PFAM: peptidase A24A, prepilin type IV.
       0.773
Csac_2630
Hypothetical protein.
       0.773
Csac_3033
KEGG: ckn:Calkro_0677 hypothetical protein.
       0.746
Csac_2627
Hypothetical protein.
       0.583
Csac_2625
PFAM: SAF domain.
       0.437
Csac_2626
Hypothetical protein.
       0.418
Csac_3034
KEGG: ckn:Calkro_0672 hypothetical protein.
       0.410
Csac_2631
PFAM: glycosyl transferase, family 2.
       0.401
Csac_2632
PFAM: Methyltransferase type 11; Methyltransferase type 12.
       0.401
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.