STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2676PFAM: DNA polymerase, beta domain protein region. (96 aa)    
Predicted Functional Partners:
Csac_2675
PFAM: protein of unknown function DUF86.
 
  
 0.961
Csac_2677
PFAM: restriction modification system DNA specificity domain.
 
     0.804
Csac_2673
Type III restriction enzyme, res subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.775
Csac_2674
PFAM: protein of unknown function DUF450.
       0.775
Csac_2672
PFAM: protein of unknown function DUF45.
       0.773
Csac_2678
Putative transcriptional regulator.
       0.773
Csac_2680
TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase.
       0.633
Csac_2679
Putative transcriptional regulator; PFAM: AAA-4 family protein.
       0.628
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.