STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2677PFAM: restriction modification system DNA specificity domain. (455 aa)    
Predicted Functional Partners:
Csac_2680
TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase.
 
 0.999
Csac_2673
Type III restriction enzyme, res subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.987
Csac_2674
PFAM: protein of unknown function DUF450.
 
  
 0.987
Csac_2672
PFAM: protein of unknown function DUF45.
 
    0.948
Csac_2678
Putative transcriptional regulator.
  
    0.880
Csac_2676
PFAM: DNA polymerase, beta domain protein region.
 
     0.804
Csac_2679
Putative transcriptional regulator; PFAM: AAA-4 family protein.
  
    0.803
Csac_2675
PFAM: protein of unknown function DUF86.
       0.788
Csac_0633
ATP-dependent endonuclease of the OLD family-like protein.
  
  
 0.749
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
 
 0.722
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.