STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2716Hypothetical protein. (91 aa)    
Predicted Functional Partners:
Csac_2715
PFAM: transposase, IS111A/IS1328/IS1533.
     0.991
Csac_0316
TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5.
  
     0.597
Csac_2400
TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1.
  
     0.565
Csac_2398
TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5.
  
     0.518
Csac_0315
TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family.
  
     0.446
Csac_1668
PFAM: transposase, IS4 family protein.
  
     0.445
Csac_2511
PFAM: transposase, IS4 family protein.
  
     0.445
Csac_1674
ATPase (AAA+ superfamily)-like protein.
  
     0.434
Csac_0177
PFAM: formylmethanofuran dehydrogenase, subunit E region.
  
     0.405
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.