STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA18566.1Triacylglycerol lipase. (490 aa)    
Predicted Functional Partners:
OTA18567.1
Hypothetical protein.
       0.777
OTA18568.1
PAAR repeat-containing protein.
       0.773
OTA18378.1
Chitinase.
    
 0.763
OTA14565.1
Chitinase.
    
 0.763
OTA14884.1
Baseplate assembly protein.
  
    0.657
OTA18564.1
Rhs element Vgr family protein.
       0.638
OTA18565.1
Hypothetical protein.
       0.638
OTA14883.1
Baseplate assembly protein.
  
  
 0.631
OTA14872.1
Phage protein.
  
  
 0.628
OTA17247.1
Peptidase P60.
  
    0.613
Your Current Organism:
Xenorhabdus vietnamensis
NCBI taxonomy Id: 351656
Other names: CIP 109945, DSM 22392, X. vietnamensis, Xenorhabdus sp. VN01, Xenorhabdus vietnamensis Tailliez et al. 2010, strain VN01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.