STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA17472.1Phage portal protein. (405 aa)    
Predicted Functional Partners:
OTA17473.1
Head-tail adaptor.
 
 
 0.981
OTA17470.1
Capsid protein.
 
 
 
 0.969
OTA17475.1
HNH endonuclease.
 
  
 0.962
OTA17471.1
Peptidase.
 
   
 0.953
OTA17476.1
Terminase.
 
  
 0.932
OTA17477.1
Terminase.
 
   
 0.914
OTA17474.1
Bacteriophage protein.
       0.804
OTA14633.1
Nuclease.
 
     0.768
OTA14626.1
Hypothetical protein.
  
     0.757
OTA14630.1
DNA polymerase I.
  
     0.757
Your Current Organism:
Xenorhabdus vietnamensis
NCBI taxonomy Id: 351656
Other names: CIP 109945, DSM 22392, X. vietnamensis, Xenorhabdus sp. VN01, Xenorhabdus vietnamensis Tailliez et al. 2010, strain VN01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.