STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA15866.1Oligopeptide transporter permease. (295 aa)    
Predicted Functional Partners:
OTA15865.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 
 0.994
OTA15864.1
Dipeptide ABC transporter ATP-binding protein DppF.
 
 0.992
OTA15867.1
Peptide ABC transporter permease.
 
 0.989
OTA15868.1
Heme-binding protein A.
 
 
 0.984
OTA15562.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
  
  0.918
OTA15146.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
  
  0.916
OTA15147.1
Dipeptide ABC transporter ATP-binding protein DppF; Belongs to the ABC transporter superfamily.
  
  0.916
OTA15564.1
Dipeptide ABC transporter permease DppB.
  
  0.909
OTA15144.1
Peptide ABC transporter permease.
 
  
  0.899
OTA15565.1
Dipeptide transporter, periplasmic-binding component of ABC superfamily.
 
 
 0.897
Your Current Organism:
Xenorhabdus vietnamensis
NCBI taxonomy Id: 351656
Other names: CIP 109945, DSM 22392, X. vietnamensis, Xenorhabdus sp. VN01, Xenorhabdus vietnamensis Tailliez et al. 2010, strain VN01
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