STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA15144.1Peptide ABC transporter permease. (306 aa)    
Predicted Functional Partners:
OTA15145.1
Peptide ABC transporter permease.
 
 0.998
OTA15147.1
Dipeptide ABC transporter ATP-binding protein DppF; Belongs to the ABC transporter superfamily.
 
 0.996
OTA15146.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 
 0.991
OTA15143.1
Periplasmic murein peptide-binding protein precursor.
 
 0.971
OTA15563.1
Peptide ABC transporter permease.
 
 0.961
OTA18334.1
Periplasmic murein peptide-binding protein precursor.
 0.960
OTA15562.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 
 
 0.960
OTA15142.1
Periplasmic murein peptide-binding protein precursor.
 
 0.960
OTA15879.1
Periplasmic murein peptide-binding protein precursor.
 
 0.929
OTA18335.1
Periplasmic murein peptide-binding protein precursor.
 
 0.928
Your Current Organism:
Xenorhabdus vietnamensis
NCBI taxonomy Id: 351656
Other names: CIP 109945, DSM 22392, X. vietnamensis, Xenorhabdus sp. VN01, Xenorhabdus vietnamensis Tailliez et al. 2010, strain VN01
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