STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU38726.1Copper homeostasis protein (lipoprotein). (234 aa)    
Predicted Functional Partners:
SFU86743.1
Protein CpxP.
  
   
 0.679
SFU96991.1
LPS O-antigen chain length determinant protein, WzzB/FepE family.
  
     0.654
SFU26901.1
YfhG lipoprotein.
  
     0.646
SFU86703.1
Two-component system, OmpR family, sensor histidine kinase CpxA.
     
 0.602
SFU90785.1
Uncharacterized membrane protein YhaH, DUF805 family.
  
     0.581
SFU96143.1
Putative lipoprotein.
  
     0.458
SFU29056.1
Anti-sigma-28 factor, FlgM family.
  
     0.436
SFU41837.1
YfaZ precursor.
  
     0.430
frdC
Fumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.423
SFU84457.1
Hemolysin, S-PFT family.
  
     0.408
Your Current Organism:
Xenorhabdus koppenhoeferi
NCBI taxonomy Id: 351659
Other names: CIP 109199, DSM 18168, X. koppenhoeferi, Xenorhabdus koppenhoeferi Tailliez et al. 2006, Xenorhabdus sp. USNJ01, strain USNJ01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.