Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFU40058.1 | SFU41428.1 | SAMN05421784_10591 | SAMN05421784_10616 | Hypothetical protein. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.408 |
SFU40058.1 | SFU96100.1 | SAMN05421784_10591 | SAMN05421784_1584 | Hypothetical protein. | RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.586 |
SFU41410.1 | SFU41428.1 | SAMN05421784_10615 | SAMN05421784_10616 | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.685 |
SFU41428.1 | SFU40058.1 | SAMN05421784_10616 | SAMN05421784_10591 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.408 |
SFU41428.1 | SFU41410.1 | SAMN05421784_10616 | SAMN05421784_10615 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | 0.685 |
SFU41428.1 | SFU72994.1 | SAMN05421784_10616 | SAMN05421784_12123 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease III. | 0.649 |
SFU41428.1 | SFU96100.1 | SAMN05421784_10616 | SAMN05421784_1584 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.527 |
SFU41428.1 | cmk | SAMN05421784_10616 | SAMN05421784_1256 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.687 |
SFU41428.1 | der | SAMN05421784_10616 | SAMN05421784_1126 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.703 |
SFU41428.1 | pheT | SAMN05421784_10616 | SAMN05421784_11711 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.434 |
SFU41428.1 | rlmL | SAMN05421784_10616 | SAMN05421784_10232 | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.802 |
SFU72994.1 | SFU41428.1 | SAMN05421784_12123 | SAMN05421784_10616 | Exodeoxyribonuclease III. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.649 |
SFU72994.1 | rlmL | SAMN05421784_12123 | SAMN05421784_10232 | Exodeoxyribonuclease III. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.516 |
SFU96100.1 | SFU40058.1 | SAMN05421784_1584 | SAMN05421784_10591 | RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein. | 0.586 |
SFU96100.1 | SFU41428.1 | SAMN05421784_1584 | SAMN05421784_10616 | RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.527 |
SFU96100.1 | pheT | SAMN05421784_1584 | SAMN05421784_11711 | RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.415 |
SFU96100.1 | rlmL | SAMN05421784_1584 | SAMN05421784_10232 | RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.612 |
cmk | SFU41428.1 | SAMN05421784_1256 | SAMN05421784_10616 | Cytidylate kinase. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.687 |
cmk | der | SAMN05421784_1256 | SAMN05421784_1126 | Cytidylate kinase. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.979 |
cmk | pheT | SAMN05421784_1256 | SAMN05421784_11711 | Cytidylate kinase. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.459 |
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