Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFU38991.1 | SFU42017.1 | SAMN05421784_10544 | SAMN05421784_10647 | Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family. | Hypothetical protein. | 0.748 |
SFU38991.1 | rpsF | SAMN05421784_10544 | SAMN05421784_12349 | Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.602 |
SFU41980.1 | SFU41998.1 | SAMN05421784_10645 | SAMN05421784_10646 | Protein of unknown function. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.929 |
SFU41980.1 | SFU42017.1 | SAMN05421784_10645 | SAMN05421784_10647 | Protein of unknown function. | Hypothetical protein. | 0.947 |
SFU41998.1 | SFU41980.1 | SAMN05421784_10646 | SAMN05421784_10645 | Diguanylate cyclase (GGDEF) domain-containing protein. | Protein of unknown function. | 0.929 |
SFU41998.1 | SFU42017.1 | SAMN05421784_10646 | SAMN05421784_10647 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.836 |
SFU41998.1 | guaA | SAMN05421784_10646 | SAMN05421784_11761 | Diguanylate cyclase (GGDEF) domain-containing protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.704 |
SFU41998.1 | guaB | SAMN05421784_10646 | SAMN05421784_11762 | Diguanylate cyclase (GGDEF) domain-containing protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.698 |
SFU42017.1 | SFU38991.1 | SAMN05421784_10647 | SAMN05421784_10544 | Hypothetical protein. | Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family. | 0.748 |
SFU42017.1 | SFU41980.1 | SAMN05421784_10647 | SAMN05421784_10645 | Hypothetical protein. | Protein of unknown function. | 0.947 |
SFU42017.1 | SFU41998.1 | SAMN05421784_10647 | SAMN05421784_10646 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.836 |
SFU42017.1 | SFU60113.1 | SAMN05421784_10647 | SAMN05421784_11437 | Hypothetical protein. | WD40-like Beta Propeller Repeat. | 0.725 |
SFU42017.1 | guaA | SAMN05421784_10647 | SAMN05421784_11761 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.729 |
SFU42017.1 | guaB | SAMN05421784_10647 | SAMN05421784_11762 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.692 |
SFU42017.1 | lolA | SAMN05421784_10647 | SAMN05421784_12515 | Hypothetical protein. | Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.635 |
SFU42017.1 | lolB | SAMN05421784_10647 | SAMN05421784_10343 | Hypothetical protein. | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.616 |
SFU42017.1 | rpsF | SAMN05421784_10647 | SAMN05421784_12349 | Hypothetical protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.586 |
SFU42017.1 | tolB | SAMN05421784_10647 | SAMN05421784_1287 | Hypothetical protein. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. TolB occupies a key intermediary position in the Tol-Pal system because it communicates directly with both membrane-embedded components, Pal in the outer membrane and TolA in the inner membrane. | 0.883 |
SFU60113.1 | SFU42017.1 | SAMN05421784_11437 | SAMN05421784_10647 | WD40-like Beta Propeller Repeat. | Hypothetical protein. | 0.725 |
guaA | SFU41998.1 | SAMN05421784_11761 | SAMN05421784_10646 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.704 |
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