Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFU27250.1 | SFU48352.1 | SAMN05421784_101137 | SAMN05421784_10881 | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Uncharacterized protein. | 0.666 |
SFU27250.1 | SFU68341.1 | SAMN05421784_101137 | SAMN05421784_11830 | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Hypothetical protein. | 0.554 |
SFU27250.1 | hflD | SAMN05421784_101137 | SAMN05421784_10853 | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | High frequency lysogenization protein. | 0.626 |
SFU47752.1 | SFU47811.1 | SAMN05421784_10851 | SAMN05421784_10854 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.468 |
SFU47752.1 | hflD | SAMN05421784_10851 | SAMN05421784_10853 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | High frequency lysogenization protein. | 0.548 |
SFU47752.1 | mnmA | SAMN05421784_10851 | SAMN05421784_10852 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family. | 0.566 |
SFU47811.1 | SFU47752.1 | SAMN05421784_10854 | SAMN05421784_10851 | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | 0.468 |
SFU47811.1 | hflD | SAMN05421784_10854 | SAMN05421784_10853 | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | High frequency lysogenization protein. | 0.708 |
SFU47811.1 | mnmA | SAMN05421784_10854 | SAMN05421784_10852 | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family. | 0.758 |
SFU48352.1 | SFU27250.1 | SAMN05421784_10881 | SAMN05421784_101137 | Uncharacterized protein. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.666 |
SFU48352.1 | SFU68341.1 | SAMN05421784_10881 | SAMN05421784_11830 | Uncharacterized protein. | Hypothetical protein. | 0.592 |
SFU48352.1 | hflD | SAMN05421784_10881 | SAMN05421784_10853 | Uncharacterized protein. | High frequency lysogenization protein. | 0.676 |
SFU48352.1 | zipA | SAMN05421784_10881 | SAMN05421784_11036 | Uncharacterized protein. | Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. | 0.626 |
SFU68341.1 | SFU27250.1 | SAMN05421784_11830 | SAMN05421784_101137 | Hypothetical protein. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.554 |
SFU68341.1 | SFU48352.1 | SAMN05421784_11830 | SAMN05421784_10881 | Hypothetical protein. | Uncharacterized protein. | 0.592 |
SFU68341.1 | hflD | SAMN05421784_11830 | SAMN05421784_10853 | Hypothetical protein. | High frequency lysogenization protein. | 0.706 |
SFU68341.1 | rnt | SAMN05421784_11830 | SAMN05421784_10380 | Hypothetical protein. | RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.523 |
SFU68341.1 | truD | SAMN05421784_11830 | SAMN05421784_10154 | Hypothetical protein. | tRNA pseudouridine13 synthase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.420 |
SFU68341.1 | zipA | SAMN05421784_11830 | SAMN05421784_11036 | Hypothetical protein. | Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. | 0.526 |
hflD | SFU27250.1 | SAMN05421784_10853 | SAMN05421784_101137 | High frequency lysogenization protein. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.626 |
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