STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exc [...] (304 aa)    
Predicted Functional Partners:
SFU50370.1
Hypothetical protein.
  
    0.885
SFU50417.1
Putative hydrolase of the HAD superfamily.
  
    0.819
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
  
 0.808
SFU78098.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
   
 0.681
SFU50439.1
ATP-dependent DNA helicase UvrD.
     
 0.610
SFU67902.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
 
 
0.599
SFU26896.1
Type 1 fimbriae regulatory protein FimB.
  
 
 
0.579
SFU50307.1
Predicted small lipoprotein YifL.
     
 0.573
SFU55705.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
 
   0.573
SFU27035.1
Type 1 fimbriae regulatory protein FimB.
  
 
 
0.555
Your Current Organism:
Xenorhabdus koppenhoeferi
NCBI taxonomy Id: 351659
Other names: CIP 109199, DSM 18168, X. koppenhoeferi, Xenorhabdus koppenhoeferi Tailliez et al. 2006, Xenorhabdus sp. USNJ01, strain USNJ01
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