STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU54931.1Integrating conjugative element protein, PFL_4705 family. (473 aa)    
Predicted Functional Partners:
SFU54870.1
Conjugative transfer region protein, TIGR03750 family.
 
     0.947
SFU54888.1
Integrating conjugative element protein, PFL_4703 family.
 
     0.947
SFU54910.1
Integrating conjugative element protein, PFL_4704 family.
 
     0.947
SFU54979.1
Conjugative transfer region lipoprotein, TIGR03751 family.
 
     0.947
SFU55003.1
Conjugative transfer ATPase, PFL_4706 family.
 
     0.947
SFU55992.1
Type IV pili sensor histidine kinase and response regulator.
 
     0.784
SFU54677.1
Type IV pili sensor histidine kinase and response regulator.
 
     0.783
SFU56048.1
Transglycosylase SLT domain-containing protein.
 
     0.779
SFU54719.1
Integrating conjugative element protein, PFL_4695 family.
 
     0.778
SFU54747.1
Conjugative coupling factor TraD, TOL family.
 
     0.778
Your Current Organism:
Xenorhabdus koppenhoeferi
NCBI taxonomy Id: 351659
Other names: CIP 109199, DSM 18168, X. koppenhoeferi, Xenorhabdus koppenhoeferi Tailliez et al. 2006, Xenorhabdus sp. USNJ01, strain USNJ01
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.