STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU61748.1Transcriptional regulator, AraC family. (297 aa)    
Predicted Functional Partners:
SFU29168.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.900
SFU31396.1
Acyl transferase domain-containing protein.
  
 
 0.850
SFU95033.1
Chorismate mutase.
  
 
 0.847
rpoS
RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
    
 
 0.834
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
    
 
 0.834
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.834
SFU53043.1
Transcriptional regulator, GntR family.
 
  
 0.833
SFU61596.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
  
 0.816
SFU86333.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
 
 0.815
SFU61569.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.789
Your Current Organism:
Xenorhabdus koppenhoeferi
NCBI taxonomy Id: 351659
Other names: CIP 109199, DSM 18168, X. koppenhoeferi, Xenorhabdus koppenhoeferi Tailliez et al. 2006, Xenorhabdus sp. USNJ01, strain USNJ01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.