STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU84369.1Type VI secretion system protein. (146 aa)    
Predicted Functional Partners:
SFU84403.1
Type VI secretion system protein ImpB.
 
  
 0.983
SFU84271.1
Type VI secretion system protein ImpK.
 
  
 0.968
SFU84336.1
Type VI secretion system protein ImpH.
 
  
 0.966
SFU84315.1
Type VI secretion system protein ImpI.
 
  
 0.964
SFU84201.1
Type VI secretion system protein VasJ.
 
  
 0.964
SFU84301.1
Type VI secretion system protein VasD.
 
  
 0.962
SFU84387.1
Type VI secretion system protein ImpC.
 
  
 0.959
SFU84353.1
Type VI secretion system protein ImpG.
 
  
 0.952
SFU84185.1
Type VI secretion system protein ImpL.
 
  
 0.951
SFU84284.1
Type VI secretion system protein ImpJ.
 
  
 0.924
Your Current Organism:
Xenorhabdus koppenhoeferi
NCBI taxonomy Id: 351659
Other names: CIP 109199, DSM 18168, X. koppenhoeferi, Xenorhabdus koppenhoeferi Tailliez et al. 2006, Xenorhabdus sp. USNJ01, strain USNJ01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.