Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFU26885.1 | SFU27967.1 | SAMN05421784_10117 | SAMN05421784_10213 | AsmA protein. | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | 0.718 |
SFU26885.1 | SFU38750.1 | SAMN05421784_10117 | SAMN05421784_10533 | AsmA protein. | Transcriptional antiterminator, Rof. | 0.776 |
SFU26885.1 | SFU40058.1 | SAMN05421784_10117 | SAMN05421784_10591 | AsmA protein. | Hypothetical protein. | 0.683 |
SFU26885.1 | SFU70914.1 | SAMN05421784_10117 | SAMN05421784_1208 | AsmA protein. | Outer membrane pore protein F. | 0.729 |
SFU26885.1 | SFU86061.1 | SAMN05421784_10117 | SAMN05421784_1358 | AsmA protein. | DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.699 |
SFU26885.1 | SFU86376.1 | SAMN05421784_10117 | SAMN05421784_13529 | AsmA protein. | Membrane protein. | 0.681 |
SFU26885.1 | SFU93158.1 | SAMN05421784_10117 | SAMN05421784_14816 | AsmA protein. | Universal stress protein A. | 0.715 |
SFU26885.1 | lpoB | SAMN05421784_10117 | SAMN05421784_10867 | AsmA protein. | Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family. | 0.731 |
SFU26885.1 | zapB | SAMN05421784_10117 | SAMN05421784_13614 | AsmA protein. | Cell division protein ZapB; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA. | 0.671 |
SFU27967.1 | SFU26885.1 | SAMN05421784_10213 | SAMN05421784_10117 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | AsmA protein. | 0.718 |
SFU27967.1 | SFU38750.1 | SAMN05421784_10213 | SAMN05421784_10533 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Transcriptional antiterminator, Rof. | 0.755 |
SFU27967.1 | SFU40058.1 | SAMN05421784_10213 | SAMN05421784_10591 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Hypothetical protein. | 0.753 |
SFU27967.1 | SFU70914.1 | SAMN05421784_10213 | SAMN05421784_1208 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Outer membrane pore protein F. | 0.557 |
SFU27967.1 | SFU86061.1 | SAMN05421784_10213 | SAMN05421784_1358 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.772 |
SFU27967.1 | SFU86376.1 | SAMN05421784_10213 | SAMN05421784_13529 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Membrane protein. | 0.730 |
SFU27967.1 | SFU93158.1 | SAMN05421784_10213 | SAMN05421784_14816 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Universal stress protein A. | 0.740 |
SFU27967.1 | lpoB | SAMN05421784_10213 | SAMN05421784_10867 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family. | 0.773 |
SFU27967.1 | mukF | SAMN05421784_10213 | SAMN05421784_1025 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Bacterial condensin subunit MukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity. | 0.747 |
SFU27967.1 | zapB | SAMN05421784_10213 | SAMN05421784_13614 | Outer membrane pore protein F; Belongs to the Gram-negative porin family. | Cell division protein ZapB; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA. | 0.767 |
SFU38750.1 | SFU26885.1 | SAMN05421784_10533 | SAMN05421784_10117 | Transcriptional antiterminator, Rof. | AsmA protein. | 0.776 |
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