Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFU36354.1 | rnb | SAMN05421784_10468 | SAMN05421784_1772 | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.412 |
SFU58780.1 | SFU77450.1 | SAMN05421784_11331 | SAMN05421784_12441 | Hypothetical protein. | Hypothetical protein. | 0.599 |
SFU58780.1 | rnb | SAMN05421784_11331 | SAMN05421784_1772 | Hypothetical protein. | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.488 |
SFU77450.1 | SFU58780.1 | SAMN05421784_12441 | SAMN05421784_11331 | Hypothetical protein. | Hypothetical protein. | 0.599 |
SFU77450.1 | SFU98650.1 | SAMN05421784_12441 | SAMN05421784_1804 | Hypothetical protein. | Uncharacterized membrane protein YqjE. | 0.546 |
SFU77450.1 | rnb | SAMN05421784_12441 | SAMN05421784_1772 | Hypothetical protein. | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.501 |
SFU98432.1 | rnb | SAMN05421784_1771 | SAMN05421784_1772 | Hypothetical protein. | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.773 |
SFU98650.1 | SFU77450.1 | SAMN05421784_1804 | SAMN05421784_12441 | Uncharacterized membrane protein YqjE. | Hypothetical protein. | 0.546 |
SFU98650.1 | rnb | SAMN05421784_1804 | SAMN05421784_1772 | Uncharacterized membrane protein YqjE. | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.421 |
rnb | SFU36354.1 | SAMN05421784_1772 | SAMN05421784_10468 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | 0.412 |
rnb | SFU58780.1 | SAMN05421784_1772 | SAMN05421784_11331 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Hypothetical protein. | 0.488 |
rnb | SFU77450.1 | SAMN05421784_1772 | SAMN05421784_12441 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Hypothetical protein. | 0.501 |
rnb | SFU98432.1 | SAMN05421784_1772 | SAMN05421784_1771 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Hypothetical protein. | 0.773 |
rnb | SFU98650.1 | SAMN05421784_1772 | SAMN05421784_1804 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Uncharacterized membrane protein YqjE. | 0.421 |
rnb | rnd | SAMN05421784_1772 | SAMN05421784_11834 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.539 |
rnb | rne | SAMN05421784_1772 | SAMN05421784_10885 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.567 |
rnb | rnpA | SAMN05421784_1772 | SAMN05421784_14216 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.499 |
rnb | rph | SAMN05421784_1772 | SAMN05421784_12742 | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.547 |
rnd | rnb | SAMN05421784_11834 | SAMN05421784_1772 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Exoribonuclease-2; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.539 |
rnd | rne | SAMN05421784_11834 | SAMN05421784_10885 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.607 |
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