STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU98944.1SRSO17 transposase. (389 aa)    
Predicted Functional Partners:
SFU55535.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
  
    0.546
SFU38690.1
MbtH protein.
  
     0.534
SFU96552.1
Transposase.
  
     0.533
SFU50906.1
Hypothetical protein.
  
     0.502
SFU82761.1
Putative transposase of IS4/5 family.
  
     0.468
SFU68284.1
Hypothetical protein.
  
     0.448
SFU31420.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.434
Your Current Organism:
Xenorhabdus koppenhoeferi
NCBI taxonomy Id: 351659
Other names: CIP 109199, DSM 18168, X. koppenhoeferi, Xenorhabdus koppenhoeferi Tailliez et al. 2006, Xenorhabdus sp. USNJ01, strain USNJ01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.