STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_0024Type II restriction enzyme; Function of strongly homologous gene; enzyme. (1227 aa)    
Predicted Functional Partners:
XDD1_0021
Homologs of previously reported genes of unknown function.
 
  
 0.996
XDD1_0019
Homologs of previously reported genes of unknown function.
 
  
 0.991
XDD1_0025
Putative atpase involved in dna repair; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.989
XDD1_0027
Homologs of previously reported genes of unknown function.
 
  
 0.974
XDD1_0026
Homologs of previously reported genes of unknown function.
 
    0.953
XDD1_2067
Protein of unknown function; No homology to any previously reported sequences.
  
    0.867
XDD1_0023
Homologs of previously reported genes of unknown function.
 
     0.815
XDD1_1916
Homologs of previously reported genes of unknown function.
  
    0.795
XDD1_0022
Homologs of previously reported genes of unknown function.
       0.773
iolB
5-deoxy-glucuronate isomerase.
   
    0.741
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.