Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XDD1_0270 | XDD1_0271 | XDD1_0270 | XDD1_0271 | Protein of unknown function; No homology to any previously reported sequences. | Ribosomal RNA 5S ribosomal RNA; Homologs of previously reported genes of unknown function. | 0.572 |
XDD1_0270 | birA | XDD1_0270 | XDD1_0273 | Protein of unknown function; No homology to any previously reported sequences. | Bifunctional protein BirA [Includes: Biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.408 |
XDD1_0270 | murB | XDD1_0270 | XDD1_0272 | Protein of unknown function; No homology to any previously reported sequences. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.408 |
XDD1_0271 | XDD1_0270 | XDD1_0271 | XDD1_0270 | Ribosomal RNA 5S ribosomal RNA; Homologs of previously reported genes of unknown function. | Protein of unknown function; No homology to any previously reported sequences. | 0.572 |
birA | XDD1_0270 | XDD1_0273 | XDD1_0270 | Bifunctional protein BirA [Includes: Biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | Protein of unknown function; No homology to any previously reported sequences. | 0.408 |
birA | murB | XDD1_0273 | XDD1_0272 | Bifunctional protein BirA [Includes: Biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.941 |
murB | XDD1_0270 | XDD1_0272 | XDD1_0270 | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | Protein of unknown function; No homology to any previously reported sequences. | 0.408 |
murB | birA | XDD1_0272 | XDD1_0273 | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | Bifunctional protein BirA [Includes: Biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.941 |