STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
XDD1_0386Putative transcriptional repressor for ribose metabolism (GalR/LacI family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (333 aa)    
Predicted Functional Partners:
ydfJ
Putative inner membrane metabolite transport protein ydfJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.773
gltB
Glutamate synthase [NADPH] large chain.
    
 
 0.738
XDD1_2286
Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 
 0.734
XDD1_2281
Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 
 0.574
XDD1_0384
Protein of unknown function; No homology to any previously reported sequences.
       0.519
yegW
Putative transcriptional repressor with DNA-binding Winged helix domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.494
XDD1_0383
Homologs of previously reported genes of unknown function.
  
    0.468
XDD1_3124
Sensor protein BarA.
    
 
 0.447
pldB
Lysophospholipase L2.
       0.427
XDD1_1299
PTS system N-acetylglucosamine-specific EIICBA component [Includes: N-acetylglucosamine permease IIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component] (fragment).
     
 0.401
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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