STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_0391Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator. (482 aa)    
Predicted Functional Partners:
nadR
Trifunctional NAD biosynthesis/regulator protein NadR [Includes: Transcriptional regulator NadR; Nicotinamide mononucleotide adenylyltransferase; Ribosylnicotinamide kinase].
   
  
 0.821
XDD1_2648
Putative AraC-family regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.611
hpaA
Regulator of the 4HPA-hydroxylase operon; Function of strongly homologous gene; regulator.
  
  
 0.530
XDD1_1299
PTS system N-acetylglucosamine-specific EIICBA component [Includes: N-acetylglucosamine permease IIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component] (fragment).
  
  
 0.509
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.489
treB
PTS system trehalose-specific EIIBC component [Includes: Trehalose-specific phosphotransferase enzyme IIB component; Trehalose permease IIC component].
  
  
 0.432
murP
PTS system N-acetylmuramic acid-specific EIIBC component [Includes: N-acetylmuramic acid-specific phosphotransferase enzyme IIB component; N-acetylmuramic acid permease IIC component].
  
  
 0.432
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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