STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhsAMultiple stress resistance protein BhsA. (83 aa)    
Predicted Functional Partners:
smp
Protein smp.
  
     0.765
helD
Helicase IV.
  
     0.758
XDD1_2097
Homologs of previously reported genes of unknown function.
  
     0.756
lpoB
Conserved exported protein of unknown function; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.754
XDD1_3810
Homologs of previously reported genes of unknown function.
  
     0.749
opnS
Growth-phase-regulated outer membrane protein OpnS; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
     0.739
XDD1_3486
Homologs of previously reported genes of unknown function.
  
     0.736
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.727
opnP
Outer membrane protein, OpnP; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the Gram-negative porin family.
  
     0.715
holE
DNA polymerase III subunit theta.
  
     0.713
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.