STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bglCAryl-phospho-beta-D-glucosidase bglC; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 1 family. (479 aa)    
Predicted Functional Partners:
XDD1_0805
Homologs of previously reported genes of unknown function.
 
 
 0.997
celB
PTS system, IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.997
XDD1_0807
PTS system protein; Function of strongly homologous gene; transporter.
 
 
 0.996
crr
Glucose-specific phosphotransferase enzyme IIA component.
 
 
 0.941
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.916
glk
Glucokinase; Belongs to the bacterial glucokinase family.
    
  0.911
yeaD
Putative glucose-6-phosphate 1-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the glucose-6-phosphate 1-epimerase family.
     
 0.904
pgm
Phosphoglucomutase.
     
 0.900
fruK
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.863
XDD1_0808
Homologs of previously reported genes of unknown function.
 
  
 0.850
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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