STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_0827Transporter. (437 aa)    
Predicted Functional Partners:
yaaJ
Uncharacterized transporter yaaJ.
 
  
 0.510
XDD1_2354
Uncharacterized transporter HI_0883.
 
  
 0.498
putP
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.496
XDD1_0531
Putative Na+/H+ antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.493
brnQ
Branched-chain amino acid transport system 2 carrier protein; Component of the transport system for branched-chain amino acids.
     
 0.492
XDD1_3132
Uncharacterized transporter HI_0608.
  
  
 0.458
panF
Sodium/pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.402
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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