node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XDD1_1157 | gshB | XDD1_1157 | XDD1_1158 | Homologs of previously reported genes of unknown function; Belongs to the UPF0301 (AlgH) family. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.708 |
XDD1_1157 | rsmE | XDD1_1157 | XDD1_1159 | Homologs of previously reported genes of unknown function; Belongs to the UPF0301 (AlgH) family. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.599 |
XDD1_1157 | yqgF | XDD1_1157 | XDD1_1156 | Homologs of previously reported genes of unknown function; Belongs to the UPF0301 (AlgH) family. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.938 |
XDD1_1160 | XDD1_1161 | XDD1_1160 | XDD1_1161 | Protein of unknown function; No homology to any previously reported sequences. | Bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway); Belongs to the peptidase A24 family. | 0.552 |
XDD1_1160 | gshB | XDD1_1160 | XDD1_1158 | Protein of unknown function; No homology to any previously reported sequences. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.524 |
XDD1_1160 | rsmE | XDD1_1160 | XDD1_1159 | Protein of unknown function; No homology to any previously reported sequences. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.524 |
XDD1_1161 | XDD1_1160 | XDD1_1161 | XDD1_1160 | Bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway); Belongs to the peptidase A24 family. | Protein of unknown function; No homology to any previously reported sequences. | 0.552 |
XDD1_1161 | rsmE | XDD1_1161 | XDD1_1159 | Bifunctional prepilin peptidase: leader peptidase; methyl transferase (General Secretory Pathway); Belongs to the peptidase A24 family. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.508 |
dnaJ | prmA | XDD1_0759 | XDD1_3561 | Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.788 |
dnaJ | rsmE | XDD1_0759 | XDD1_1159 | Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.531 |
gshB | XDD1_1157 | XDD1_1158 | XDD1_1157 | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | Homologs of previously reported genes of unknown function; Belongs to the UPF0301 (AlgH) family. | 0.708 |
gshB | XDD1_1160 | XDD1_1158 | XDD1_1160 | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | Protein of unknown function; No homology to any previously reported sequences. | 0.524 |
gshB | rsmE | XDD1_1158 | XDD1_1159 | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.821 |
gshB | yqgF | XDD1_1158 | XDD1_1156 | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.624 |
prmA | dnaJ | XDD1_3561 | XDD1_0759 | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.788 |
prmA | rsmE | XDD1_3561 | XDD1_1159 | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.770 |
prmA | rsmG | XDD1_3561 | XDD1_0042 | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.487 |
prmA | rsmI | XDD1_3561 | XDD1_3490 | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.409 |
rlmL | rsmE | XDD1_1599 | XDD1_1159 | Ribosomal RNA large subunit methyltransferase L; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.469 |
rsmE | XDD1_1157 | XDD1_1159 | XDD1_1157 | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Homologs of previously reported genes of unknown function; Belongs to the UPF0301 (AlgH) family. | 0.599 |