STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_1625Homologs of previously reported genes of unknown function. (228 aa)    
Predicted Functional Partners:
nuoM
NADH-quinone oxidoreductase subunit M.
    
 
 0.728
XDD1_3202
Homologs of previously reported genes of unknown function.
   
 
 0.718
XDD1_2144
Putative Extracellular serine protease precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
   
 
 0.654
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
   0.619
XDD1_2360
Homologs of previously reported genes of unknown function.
    
  0.480
ychM
Putative sulfate transporter ychM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
   0.426
XDD1_2223
Homologs of previously reported genes of unknown function.
    
   0.426
XDD1_1626
Putative Outer membrane autotransporter barrel; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.405
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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