sfsB-5 protein (Xenorhabdus doucetiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sfsB-5

Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype. (92 aa)

Predicted Functional Partners:

XDD1_0458

0.564

ydgH

0.552

XDD1_0497

0.434

XDD1_3517

0.421

XDD1_1647

0.419

XDD1_1648

0.419

Your Current Organism:

Xenorhabdus doucetiae

NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XDD1_0458	sfsB-5	XDD1_0458	XDD1_1649	Complete genome; segment 16/17.	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	0.564
XDD1_0497	XDD1_3517	XDD1_0497	XDD1_3517	Homologs of previously reported genes of unknown function; Belongs to the UPF0306 family.	Homologs of previously reported genes of unknown function.	0.579
XDD1_0497	sfsB-5	XDD1_0497	XDD1_1649	Homologs of previously reported genes of unknown function; Belongs to the UPF0306 family.	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	0.434
XDD1_0497	ydgH	XDD1_0497	XDD1_2109	Homologs of previously reported genes of unknown function; Belongs to the UPF0306 family.	Protein ydgH.	0.597
XDD1_1647	XDD1_1648	XDD1_1647	XDD1_1648	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.944
XDD1_1647	sfsB-5	XDD1_1647	XDD1_1649	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	0.419
XDD1_1648	XDD1_1647	XDD1_1648	XDD1_1647	Putative terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.944
XDD1_1648	sfsB-5	XDD1_1648	XDD1_1649	Putative terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	0.419
XDD1_3517	XDD1_0497	XDD1_3517	XDD1_0497	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function; Belongs to the UPF0306 family.	0.579
XDD1_3517	sfsB-5	XDD1_3517	XDD1_1649	Homologs of previously reported genes of unknown function.	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	0.421
XDD1_3517	ydgH	XDD1_3517	XDD1_2109	Homologs of previously reported genes of unknown function.	Protein ydgH.	0.774
sfsB-5	XDD1_0458	XDD1_1649	XDD1_0458	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	Complete genome; segment 16/17.	0.564
sfsB-5	XDD1_0497	XDD1_1649	XDD1_0497	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	Homologs of previously reported genes of unknown function; Belongs to the UPF0306 family.	0.434
sfsB-5	XDD1_1647	XDD1_1649	XDD1_1647	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.419
sfsB-5	XDD1_1648	XDD1_1649	XDD1_1648	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	Putative terminase large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.419
sfsB-5	XDD1_3517	XDD1_1649	XDD1_3517	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	Homologs of previously reported genes of unknown function.	0.421
sfsB-5	ydgH	XDD1_1649	XDD1_2109	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	Protein ydgH.	0.552
ydgH	XDD1_0497	XDD1_2109	XDD1_0497	Protein ydgH.	Homologs of previously reported genes of unknown function; Belongs to the UPF0306 family.	0.597
ydgH	XDD1_3517	XDD1_2109	XDD1_3517	Protein ydgH.	Homologs of previously reported genes of unknown function.	0.774
ydgH	sfsB-5	XDD1_2109	XDD1_1649	Protein ydgH.	Sugar fermentation stimulation protein B (Ner-like protein); Function of homologous gene experimentally demonstrated in an other organism; phenotype.	0.552

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About