STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_1908Putative Phenylalanine racemase (ATP-hydrolyzing) (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (2079 aa)    
Predicted Functional Partners:
XDD1_2286
Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
0.998
XDD1_0770
Homologs of previously reported genes of unknown function; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
0.997
XDD1_1906
Putative Phenylalanine racemase (ATP-hydrolyzing); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
0.993
XDD1_1907
Putative Non-ribosomal peptide synthase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
0.993
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 0.992
XDD1_2715
Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.
 
 0.991
xcnL
Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.988
xcnF
Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.987
XDD1_2711
Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
0.987
XDD1_2712
Non-ribosomal peptide synthetase modules and related protein; Function of strongly homologous gene; enzyme.
 
 
0.987
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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