STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_1922Regulatory protein, gntr; Function of strongly homologous gene; regulator. (251 aa)    
Predicted Functional Partners:
XDD1_1923
Homologs of previously reported genes of unknown function.
 
     0.912
puuE
4-aminobutyrate aminotransferase; Function of strongly homologous gene; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.613
XDD1_1921
Homologs of previously reported genes of unknown function.
       0.608
XDD1_1920
Gamma-aminobutyraldehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
       0.577
nadR
Trifunctional NAD biosynthesis/regulator protein NadR [Includes: Transcriptional regulator NadR; Nicotinamide mononucleotide adenylyltransferase; Ribosylnicotinamide kinase].
   
  
 0.533
XDD1_3601
Homologs of previously reported genes of unknown function.
 
  
 0.501
pdhR
Pyruvate dehydrogenase complex repressor.
  
     0.495
XDD1_1927
FAD dependent oxidoreductase; Function of strongly homologous gene; enzyme.
 
     0.448
iclR
Acetate operon repressor.
 
  
 0.434
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.