STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_2009Homologs of previously reported genes of unknown function. (445 aa)    
Predicted Functional Partners:
XDD1_2010
Homologs of previously reported genes of unknown function.
 
  
 0.964
XDD1_2011
Inner membrane protein ynbA (modular protein).
 
 
 0.964
xplA
FliA regulated lipase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.761
lepA
GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.747
XDD1_0013
Homologs of previously reported genes of unknown function.
  
 
 
 0.590
XDD1_2012
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.579
XDD1_0012
Homologs of previously reported genes of unknown function.
  
     0.543
XDD1_0011
Homologs of previously reported genes of unknown function.
  
     0.505
ychM
Putative sulfate transporter ychM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.487
XDD1_2715
Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.
  
 
 0.455
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.