STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hexRHTH-type transcriptional regulator hexR. (282 aa)    
Predicted Functional Partners:
glk
Glucokinase; Belongs to the bacterial glucokinase family.
   
 0.894
XDD1_1299
PTS system N-acetylglucosamine-specific EIICBA component [Includes: N-acetylglucosamine permease IIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; N-acetylglucosamine-specific phosphotransferase enzyme IIA component] (fragment).
 
  
 0.632
XDD1_2076
Protein of unknown function; No homology to any previously reported sequences.
       0.572
eda
KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase].
 
   
 0.563
treB
PTS system trehalose-specific EIIBC component [Includes: Trehalose-specific phosphotransferase enzyme IIB component; Trehalose permease IIC component].
  
  
 0.516
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
     
 0.516
murP
PTS system N-acetylmuramic acid-specific EIIBC component [Includes: N-acetylmuramic acid-specific phosphotransferase enzyme IIB component; N-acetylmuramic acid permease IIC component].
  
  
 0.516
pykA
Pyruvate kinase II; Belongs to the pyruvate kinase family.
     
 0.474
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the GCKR-like family. MurNAc-6-P etherase subfamily.
 
  
 0.450
XDD1_1034
Homologs of previously reported genes of unknown function.
  
   
 0.416
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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