STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadDLong-chain-fatty-acid--CoA ligase. (564 aa)    
Predicted Functional Partners:
XDD1_3031
Putative long-chain-fatty-acid--CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
0.904
XDD1_2286
Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
0.827
XDD1_2281
Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
0.817
XDD1_3902
Protein of unknown function; No homology to any previously reported sequences.
     
  0.800
fadB
Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.735
XDD1_1031
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.702
XDD1_1906
Putative Phenylalanine racemase (ATP-hydrolyzing); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
0.702
XDD1_1907
Putative Non-ribosomal peptide synthase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
0.702
XDD1_1908
Putative Phenylalanine racemase (ATP-hydrolyzing) (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
0.702
XDD1_0770
Homologs of previously reported genes of unknown function; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
0.676
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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