node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XDD1_1154 | XDD1_2136 | XDD1_1154 | XDD1_2136 | Conserved protein of unknown function; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | 0.527 |
XDD1_1154 | yggW | XDD1_1154 | XDD1_1150 | Conserved protein of unknown function; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. | Oxygen-independent coproporphyrinogen-III oxidase-like protein yggW; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.700 |
XDD1_2134 | XDD1_2135 | XDD1_2134 | XDD1_2135 | Transposase; Function of strongly homologous gene; enzyme. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.570 |
XDD1_2134 | XDD1_2136 | XDD1_2134 | XDD1_2136 | Transposase; Function of strongly homologous gene; enzyme. | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | 0.552 |
XDD1_2135 | XDD1_2134 | XDD1_2135 | XDD1_2134 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Transposase; Function of strongly homologous gene; enzyme. | 0.570 |
XDD1_2135 | XDD1_2136 | XDD1_2135 | XDD1_2136 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | 0.746 |
XDD1_2136 | XDD1_1154 | XDD1_2136 | XDD1_1154 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Conserved protein of unknown function; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. | 0.527 |
XDD1_2136 | XDD1_2134 | XDD1_2136 | XDD1_2134 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Transposase; Function of strongly homologous gene; enzyme. | 0.552 |
XDD1_2136 | XDD1_2135 | XDD1_2136 | XDD1_2135 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.746 |
XDD1_2136 | XDD1_3877 | XDD1_2136 | XDD1_3877 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Putative Methionyl-tRNA formyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.404 |
XDD1_2136 | efp | XDD1_2136 | XDD1_0650 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | 0.417 |
XDD1_2136 | miaB | XDD1_2136 | XDD1_1293 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | (Dimethylallyl)adenosine tRNA methylthiotransferase miaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.628 |
XDD1_2136 | nusB | XDD1_2136 | XDD1_0840 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.435 |
XDD1_2136 | ribD | XDD1_2136 | XDD1_0838 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.498 |
XDD1_2136 | rsmB | XDD1_2136 | XDD1_0310 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.597 |
XDD1_2136 | yggW | XDD1_2136 | XDD1_1150 | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | Oxygen-independent coproporphyrinogen-III oxidase-like protein yggW; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.577 |
XDD1_3877 | XDD1_2136 | XDD1_3877 | XDD1_2136 | Putative Methionyl-tRNA formyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Putative Ribosomal RNA large subunit methyltransferase N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the radical SAM superfamily. RlmN family. | 0.404 |
XDD1_3877 | nusB | XDD1_3877 | XDD1_0840 | Putative Methionyl-tRNA formyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.712 |
XDD1_3877 | ribD | XDD1_3877 | XDD1_0838 | Putative Methionyl-tRNA formyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.507 |
XDD1_3877 | rsmB | XDD1_3877 | XDD1_0310 | Putative Methionyl-tRNA formyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.811 |