STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_2411Homologs of previously reported genes of unknown function. (220 aa)    
Predicted Functional Partners:
yffB
Protein yffB; Belongs to the ArsC family.
       0.800
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.800
XDD1_2772
Complete genome; segment 5/17.
 
     0.643
XDD1_1178
Putative Similar to exported protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.551
XDD1_3011
Homologs of previously reported genes of unknown function.
  
     0.444
xhlA
XhlA, Cell surface associated hemolysin (TpsA); Function of homologous gene experimentally demonstrated in an other organism; factor.
  
     0.420
deoD
Purine nucleoside phosphorylase deoD-type.
  
    0.416
narP
Nitrate/nitrite response regulator protein narP.
       0.407
xhlB
XhlB, XhlA hemolysin secretion/activation protein (TpsB); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
     0.406
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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