STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_2647Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (303 aa)    
Predicted Functional Partners:
XDD1_2648
Putative AraC-family regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.698
XDD1_0638
Homologs of previously reported genes of unknown function.
  
     0.627
XDD1_0491
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.440
XDD1_3664
Putative O-acetylserine/cysteine transport protein (RhtB family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.433
XDD1_3289
Homologs of previously reported genes of unknown function.
  
     0.405
pdxB
Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
   
   0.403
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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