STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_2709Homologs of previously reported genes of unknown function. (243 aa)    
Predicted Functional Partners:
XDD1_2710
Homologs of previously reported genes of unknown function.
 
     0.854
XDD1_2721
Putative D-alanyl carrier protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.690
XDD1_2711
Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.689
XDD1_2712
Non-ribosomal peptide synthetase modules and related protein; Function of strongly homologous gene; enzyme.
 
     0.653
XDD1_2715
Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.
 
     0.652
XDD1_0099
Permease of the major facilitator superfamily; Function of strongly homologous gene; transporter.
  
     0.572
var
Var1.
  
     0.567
XDD1_2714
Xenobiotic-transporting ATPase (fragment).
 
     0.551
XDD1_2713
Non-ribosomal peptide synthetase modules and related protein; Function of strongly homologous gene; enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
 
     0.550
hbd
Putative 3-hydroxybutyryl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.549
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.