I protein (Xenorhabdus doucetiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I

Tail protein I. (202 aa)

Predicted Functional Partners:

J

0.995

W

0.995

V-2

0.992

X

0.990

XDD1_2902

0.984

FI

0.981

FII

0.977

XDD1_2901

0.970

XDD1_2905

0.951

XDD1_2912

0.950

Your Current Organism:

Xenorhabdus doucetiae

NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FI	FII	XDD1_2907	XDD1_2906	Major tail sheath protein.	Major tail tube protein.	0.997
FI	I	XDD1_2907	XDD1_2913	Major tail sheath protein.	Tail protein I.	0.981
FI	J	XDD1_2907	XDD1_2914	Major tail sheath protein.	Baseplate assembly protein J.	0.979
FI	V-2	XDD1_2907	XDD1_2916	Major tail sheath protein.	Baseplate assembly protein V.	0.970
FI	W	XDD1_2907	XDD1_2915	Major tail sheath protein.	Baseplate assembly protein W.	0.995
FI	X	XDD1_2907	XDD1_2918	Major tail sheath protein.	Tail protein X.	0.981
FI	XDD1_2901	XDD1_2907	XDD1_2901	Major tail sheath protein.	Putative phage protein (D protein) (Modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.993
FI	XDD1_2902	XDD1_2907	XDD1_2902	Major tail sheath protein.	Putative phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.987
FI	XDD1_2905	XDD1_2907	XDD1_2905	Major tail sheath protein.	Putative phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.940
FI	XDD1_2912	XDD1_2907	XDD1_2912	Major tail sheath protein.	Protein of unknown function; No homology to any previously reported sequences.	0.793
FII	FI	XDD1_2906	XDD1_2907	Major tail tube protein.	Major tail sheath protein.	0.997
FII	I	XDD1_2906	XDD1_2913	Major tail tube protein.	Tail protein I.	0.977
FII	J	XDD1_2906	XDD1_2914	Major tail tube protein.	Baseplate assembly protein J.	0.980
FII	V-2	XDD1_2906	XDD1_2916	Major tail tube protein.	Baseplate assembly protein V.	0.968
FII	W	XDD1_2906	XDD1_2915	Major tail tube protein.	Baseplate assembly protein W.	0.975
FII	X	XDD1_2906	XDD1_2918	Major tail tube protein.	Tail protein X.	0.977
FII	XDD1_2901	XDD1_2906	XDD1_2901	Major tail tube protein.	Putative phage protein (D protein) (Modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.978
FII	XDD1_2902	XDD1_2906	XDD1_2902	Major tail tube protein.	Putative phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.985
FII	XDD1_2905	XDD1_2906	XDD1_2905	Major tail tube protein.	Putative phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.933
FII	XDD1_2912	XDD1_2906	XDD1_2912	Major tail tube protein.	Protein of unknown function; No homology to any previously reported sequences.	0.792