Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XDD1_3205Uncharacterized permease HI_1015. (458 aa)    
Predicted Functional Partners:
XDD1_3206
Homologs of previously reported genes of unknown function.
  
    0.795
XDD1_3207
Uncharacterized HTH-type transcriptional regulator HI_1009.
 
     0.672
XDD1_3208
Uncharacterized 28.3 kDa protein in gbd 5'region; Belongs to the hyi family.
       0.599
XDD1_3209
Homologs of previously reported genes of unknown function.
 
   
 0.564
gntK
Thermoresistant gluconokinase.
 
  
 0.482
glxK
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
  
 0.425
XDD1_3204
Uncharacterized permease HI_1015.
 
    
0.416
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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