STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_3207Uncharacterized HTH-type transcriptional regulator HI_1009. (266 aa)    
Predicted Functional Partners:
fruK
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.876
XDD1_3208
Uncharacterized 28.3 kDa protein in gbd 5'region; Belongs to the hyi family.
 
    0.842
XDD1_0808
Homologs of previously reported genes of unknown function.
 
  
 0.683
XDD1_3205
Uncharacterized permease HI_1015.
 
     0.671
XDD1_1232
Homologs of previously reported genes of unknown function.
    
   0.658
XDD1_3209
Homologs of previously reported genes of unknown function.
 
  
 0.658
XDD1_3206
Homologs of previously reported genes of unknown function.
       0.591
manX
PTS system mannose-specific EIIAB component [Includes: Mannose-specific phosphotransferase enzyme IIA component; Mannose-specific phosphotransferase enzyme IIB component].
 
  
 0.552
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.523
XDD1_0807
PTS system protein; Function of strongly homologous gene; transporter.
 
  
 0.514
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.