STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_3207Uncharacterized HTH-type transcriptional regulator HI_1009. (266 aa)    
Predicted Functional Partners:
XDD1_3208
Uncharacterized 28.3 kDa protein in gbd 5'region; Belongs to the hyi family.
 
   
 0.851
fruK
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.811
XDD1_3205
Uncharacterized permease HI_1015.
 
     0.672
XDD1_3209
Homologs of previously reported genes of unknown function.
 
   
 0.648
XDD1_3206
Homologs of previously reported genes of unknown function.
       0.593
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.589
ppnK
Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.506
nudC
NADH pyrophosphatase; Belongs to the Nudix hydrolase family. NudC subfamily.
     
  0.500
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
 
  
 0.488
XDD1_0808
Homologs of previously reported genes of unknown function.
 
  
 0.478
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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