STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_3425Homologs of previously reported genes of unknown function. (597 aa)    
Predicted Functional Partners:
XDD1_3424
Homologs of previously reported genes of unknown function.
  
  
 0.808
XDD1_3426
Homologs of previously reported genes of unknown function.
  
    0.792
XDD1_3422
Homologs of previously reported genes of unknown function.
       0.786
XDD1_3423
Homologs of previously reported genes of unknown function.
       0.785
XDD1_3421
Homologs of previously reported genes of unknown function.
       0.784
XDD1_3430
Putative phage gene; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.777
XDD1_3428
Uncharacterized 44.2 kDa protein in lys 3'region.
       0.775
XDD1_3429
Uncharacterized 12.7 kDa protein in lys 3'region.
       0.775
XDD1_3434
Homologs of previously reported genes of unknown function.
  
    0.498
XDD1_3431
Putative phage gene; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.473
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.