STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XDD1_3692Pyridoxal-dependent decarboxylase. (461 aa)    
Predicted Functional Partners:
XDD1_2132
Putative Tyrosine decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.704
mobB
Molybdopterin-guanine dinucleotide biosynthesis protein B.
       0.624
mobA
Putative molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
       0.624
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.513
aspA
Aspartate ammonia-lyase.
     
 0.501
asnA
Asparagine synthetase A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.499
metL
Bifunctional aspartokinase/homoserine dehydrogenase 2 [Includes: Aspartokinase; Homoserine dehydrogenase]; In the C-terminal section; belongs to the homoserine dehydrogenase family.
     
  0.499
thrA
Bifunctional aspartokinase/homoserine dehydrogenase 1 [Includes: Aspartokinase; Homoserine dehydrogenase]; In the C-terminal section; belongs to the homoserine dehydrogenase family.
     
  0.499
lysC
Lysine-sensitive aspartokinase 3; Belongs to the aspartokinase family.
     
  0.499
XDD1_1245
Putative siderophore biosynthetic enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.453
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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