Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XDD1_3124 | arcB | XDD1_3124 | XDD1_3503 | Sensor protein BarA. | Aerobic respiration control sensor protein ArcB. | 0.999 |
XDD1_3124 | cheA | XDD1_3124 | XDD1_2374 | Sensor protein BarA. | Chemotaxis protein CheA. | 0.910 |
XDD1_3124 | flhA | XDD1_3124 | XDD1_2352 | Sensor protein BarA. | Flagellar biosynthesis protein flhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.637 |
XDD1_3124 | fliF | XDD1_3124 | XDD1_2310 | Sensor protein BarA. | Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.862 |
XDD1_3124 | fliG | XDD1_3124 | XDD1_2311 | Sensor protein BarA. | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.921 |
XDD1_3124 | fliM | XDD1_3124 | XDD1_2318 | Sensor protein BarA. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.912 |
XDD1_3124 | fliS | XDD1_3124 | XDD1_2302 | Sensor protein BarA. | Flagellar protein fliS. | 0.695 |
XDD1_3124 | glnG | XDD1_3124 | XDD1_3835 | Sensor protein BarA. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.680 |
XDD1_3124 | ntrB | XDD1_3124 | XDD1_3834 | Sensor protein BarA. | Nitrogen regulation protein NR(II). | 0.621 |
arcB | XDD1_3124 | XDD1_3503 | XDD1_3124 | Aerobic respiration control sensor protein ArcB. | Sensor protein BarA. | 0.999 |
arcB | cheA | XDD1_3503 | XDD1_2374 | Aerobic respiration control sensor protein ArcB. | Chemotaxis protein CheA. | 0.685 |
arcB | flhA | XDD1_3503 | XDD1_2352 | Aerobic respiration control sensor protein ArcB. | Flagellar biosynthesis protein flhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.528 |
arcB | fliF | XDD1_3503 | XDD1_2310 | Aerobic respiration control sensor protein ArcB. | Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.704 |
arcB | fliG | XDD1_3503 | XDD1_2311 | Aerobic respiration control sensor protein ArcB. | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.826 |
arcB | fliM | XDD1_3503 | XDD1_2318 | Aerobic respiration control sensor protein ArcB. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.719 |
arcB | fliS | XDD1_3503 | XDD1_2302 | Aerobic respiration control sensor protein ArcB. | Flagellar protein fliS. | 0.408 |
arcB | glnG | XDD1_3503 | XDD1_3835 | Aerobic respiration control sensor protein ArcB. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.610 |
arcB | ntrB | XDD1_3503 | XDD1_3834 | Aerobic respiration control sensor protein ArcB. | Nitrogen regulation protein NR(II). | 0.670 |
arcB | rpoN | XDD1_3503 | XDD1_3528 | Aerobic respiration control sensor protein ArcB. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.470 |
cheA | XDD1_3124 | XDD1_2374 | XDD1_3124 | Chemotaxis protein CheA. | Sensor protein BarA. | 0.910 |
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