STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI47309.1ATP-binding cassette, subfamily B, RtxB. (702 aa)    
Predicted Functional Partners:
SFI47339.1
Membrane fusion protein, RTX toxin transport system.
 0.991
SFJ86753.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
  0.921
SFJ99587.1
Membrane fusion protein, protease secretion system.
 0.883
SFI47371.1
ATP-binding cassette, subfamily B, RtxE.
 
  
 
0.867
SFJ64438.1
ATP-binding cassette, subfamily B.
 
 
 
0.857
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.852
SFJ64409.1
ATP-binding cassette, subfamily B.
 
 
 
0.844
SFJ29869.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
 
 
0.842
fbpC
iron(III) transport system ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
    
0.799
SFI44874.1
HlyD family secretion protein.
  
 0.697
Your Current Organism:
Xenorhabdus mauleonii
NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01
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