STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ10393.1Type VI secretion system protein VasD. (189 aa)    
Predicted Functional Partners:
SFJ10300.1
Type VI secretion system protein ImpK.
 
  
 0.989
SFJ10257.1
Type VI secretion system protein ImpL.
 
  
 0.935
SFJ10347.1
Type VI secretion system protein ImpJ.
 
  
 0.921
SFJ10208.1
Type VI secretion system protein ImpA.
 
  
 0.901
SFI96009.1
Type VI secretion system protein ImpK.
 
  
 0.850
SFJ09997.1
Type VI secretion system protein ImpF.
 
  
 0.831
SFJ10089.1
Type VI secretion system secreted protein Hcp.
 
    0.826
SFJ10573.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
 
    0.825
SFJ10481.1
Protein of unknown function.
 
     0.824
SFJ10040.1
FHA domain-containing protein.
 
     0.806
Your Current Organism:
Xenorhabdus mauleonii
NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.